PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01035599.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 160aa    MW: 17957.7 Da    PI: 5.0509
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01035599.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.32.7e-31316047203
                   GRAS  47 eALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqa 131
                              La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++
  AMDW01035599.1_FGP001   3 DCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHE 88 
                            6799999999999999985444443..34555578899**********************************86679*********** PP

                   GRAS 132 LasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEala 203
                            L  Rpegpp  +R+T+v++    + e l +++e  ++ Aeelg++f+f+  v+ +ledl++++L    ++k+gEal+
  AMDW01035599.1_FGP001  89 LRRRPEGPPrVVRLTVVHD----DGELLAKMAELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLrnvlEIKSGEALV 160
                            *****9988789*******....***************************.7999****999985555677788875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.9141160IPR005202Transcription factor GRAS
PfamPF035149.5E-293160IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVDCLARRLL RPVQAITDAL IDPSVYLDRR SVRAARRGFF ELSPFPKVAF VVGNRAIVEA  60
VENESLVHVV GMSGPFTQPC QWIQLLHELR RRPEGPPRVV RLTVVHDDGE LLAKMAELVS  120
DEAEELGMEF QFHGVVGQLE DLDFSNLRNV LEIKSGEALV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616103.11e-109PREDICTED: scarecrow-like protein 3
TrEMBLA0A0E0BF501e-111A0A0E0BF50_9ORYZ; Uncharacterized protein
STRINGBGIOSGA034518-PA1e-108(Oryza sativa Indica Group)
STRINGLOC_Os11g04590.11e-109(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-20scarecrow-like 3